Miniature example of whole-brain imaging data over time from Bonapersona et al.

A dataset containing the cleaned coordinates of c-fos positive cells in a selection of brain areas (amygdala and hippocampus) after foot-shock. Experimental groups are: 30, 90, 180 minutes after foot-shock and a sham control (0 min). For more information, see https://osf.io/8muvw/ .

example

Format

A data frame in long format with each row indicating a c-fos+ cells. Contains 177885 rows and 7 variables:

sample_id

unique identified for each sample

xPos

position on the x-axis in horizontal sectioning, consistent with ABA (25µm, mouse)

yPos

position on the y-axis in horizontal sectioning, consistent with ABA (25µm, mouse)

zPos

position on the z-axis in horizontal sectioning, consistent with ABA (25µm, mouse)

maxInt

maximum expression level of c-fos measured per cell, estimated with Imaris

my_grouping

grouping of the brain areas based on the researchers specified spatial resolution, consistent with acronyms from ABA (25µm, mouse)

hemisphere

hemisphere

Source

https://osf.io/8muvw/